I've noticed that the accept/reject notification dialog is displayed for files which have been modified outside of geany (which may or may not have been changed), at least I don't remember having made changes, outside of geany, every time it is displayed.
I find my self just clicking **ignore** (which seems to be often) and just moving on.
I'm wondering if: 1. Is the notification dialog really necessary? (eg. could it just force the rejection and log a status message) 2. or maybe the display of the notification dialog could be a plugin configuration option (if it is disabled -- then maybe it could be auto-rejected like in the first part and perhaps that could be configured as well)
Long story short -- I really don't think displaying a modal notification, when a file is loaded, is really necessary when all someone wants to do (is ignore/reject) and load the standard bookmarks (which from my experience aren't saved by geany).
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This following code blob in **geanynumberedbookmarks.c** is responsible for showing the dialog:
https://github.com/geany/geany-plugins/blob/ddf06e8a1ce945a9d3dbdf482dc9aeb8...