I've noticed that the accept/reject notification dialog is displayed for files which have been modified outside of geany (which may or may not have been changed), at least I don't remember having made changes, outside of geany, every time it is displayed.

I find my self just clicking ignore (which seems to be often) and just moving on.

I'm wondering if:

Is the notification dialog really necessary? (eg. could it just force the rejection and log a status message)
or maybe the display of the notification dialog could be a plugin configuration option (if it is disabled -- then maybe it could be auto-rejected like in the first part and perhaps that could be configured as well)

Long story short -- I really don't think displaying a modal notification, when a file is loaded, is really necessary when all someone wants to do (is ignore/reject) and load the standard bookmarks (which from my experience aren't saved by geany).

This following code blob in geanynumberedbookmarks.c is responsible for showing the dialog:

https://github.com/geany/geany-plugins/blob/ddf06e8a1ce945a9d3dbdf482dc9aeb8478f080c/geanynumberedbookmarks/src/geanynumberedbookmarks.c#L967-L981

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