[Geany-Users] Run Error

Wed Nov 22 20:05:43 UTC 2017

On 23 November 2017 at 05:52, Lex Trotman <elextr at gmail.com> wrote:
> Hi Stephen,
>
> This is the Geany mailing list not the Numpy or Matplotlib or Python
> ML.  Geany is just the editor/IDE, your problem is, as Matthew said,
> in your program, not in Geany.  This is not the correct forum to ask
> questions about your program or the libraries it uses.  You need to
> ask the question at the appropriate forum, at a guess Matplotlib might
> be the culprit.

To make a non-programming analogy that hopefully will be clear, Geany
is just a tool for putting together a program, just as spanners are a
tool for putting together a car, but you don't ask the spanner
manufacturer why your car does not work.

Cheers
Lex

>
> Cheers
> Lex
>
> On 23 November 2017 at 01:53, Stephen P. Molnar <s.molnar at sbcglobal.net> wrote:
>>
>> On 11/22/2017 10:13 AM, Matthew Brush wrote:
>>>
>>> On 2017-11-22 06:29 AM, Stephen P. Molnar wrote:
>>>>
>>>> I am running Geny v-1.31 from Debian Stretch on my Linux platform.
>>>>
>>>> FOr unknown reasons I have started getting error messages from a Python
>>>> 3..5 script I wrote to plot multiple curves frlom data generated by a
>>>> FORTRAN09 program.
>>>>
>>>> Enter Molecule ID: A
>>>> Traceback (most recent call last):
>>>>    File "MolT_5IMT_w_3_2_plot.py", line 83, in <module>
>>>>      fig.savefig(name_plt,bbox_inches='tight')
>>>>    File "/usr/local/lib/python3.5/dist-packages/matplotlib/figure.py",
>>>> line 1814, in savefig
>>>>      self.canvas.print_figure(fname, **kwargs)
>>>>    File
>>>> "/usr/local/lib/python3.5/dist-packages/matplotlib/backend_bases.py", line
>>>> 2180, in print_figure
>>>>      self.figure.dpi = dpi
>>>>    File "/usr/local/lib/python3.5/dist-packages/matplotlib/figure.py",
>>>> line 436, in _set_dpi
>>>>      self.set_size_inches(w, h, forward=forward)
>>>>    File "/usr/local/lib/python3.5/dist-packages/matplotlib/figure.py",
>>>> line 745, in set_size_inches
>>>>      manager.resize(int(canvasw), int(canvash))
>>>>    File
>>>> "/usr/local/lib/python3.5/dist-packages/matplotlib/backends/backend_tkagg.py",
>>>> line 540, in resize
>>>>      self.canvas._tkcanvas.master.geometry("%dx%d" % (width, height))
>>>>    File "/usr/lib/python3.5/tkinter/__init__.py", line 1698, in
>>>> wm_geometry
>>>>      return self.tk.call('wm', 'geometry', self._w, newGeometry)
>>>> _tkinter.TclError: can't invoke "wm" command: application has been
>>>> destroyed
>>>>
>>>>
>>>> ------------------
>>>> (program exited with code: 1)
>>>> Press return to continue
>>>>
>>>> Unfortunately, I am an Organic Chemist and not really a Python programmer
>>>> and wpuld really appreciate some help in solving this problem.
>>>>
>>>
>>> It's not a Geany related problem, it's something with your code, but it's
>>> hard to say what since you didn't attach/pastebin the code. I expect based
>>> on the error message that you are calling the 'wm' command after (or before)
>>> the tk main window has been created.
>>>
>>> Regards,
>>> Matthew Brush
>>> _______________________________________________
>>> Users mailing list
>>> Users at lists.geany.org
>>> https://lists.geany.org/cgi-bin/mailman/listinfo/users
>>
>> Here's the code:
>>
>> #!/usr/bin/env python3
>> # -*- coding: utf-8 -*-
>> """
>> Multiple_Plots_3.py
>>
>> Copyright (c) 2017 Stephen P. Molnar, Ph.D.  All rights reserved.
>>
>> """
>> import numpy as np
>> from mpl_toolkits.axes_grid1 import host_subplot
>> import mpl_toolkits.axisartist as AA
>> import matplotlib.pyplot as plt
>>
>> data = []
>> name = input("Enter Molecule ID: ")
>>
>> name_in = name+'_P'
>> data = np.genfromtxt(name_in)
>>
>> s = data[:,0]
>> FTm = data[:,1]     #atomic number
>> FTe = data[:,2]     #atomic mass
>> FTc = data[:,3]     #atom electron density
>>
>>
>> fig = plt.figure(figsize=(7.6,4))
>>
>> host = host_subplot(111, axes_class=AA.Axes)
>> plt.subplots_adjust(right=0.75)
>>
>> par1 = host.twinx()
>> par2 = host.twinx()
>>
>> offset = 60
>> new_fixed_axis = par2.get_grid_helper().new_fixed_axis
>> par2.axis["right"] = new_fixed_axis(loc="right", axes=par2,offset=(offset,
>> 0))
>>
>> par2.axis["right"].toggle(all=True)
>>
>> host.set_xlim(0, 30)
>>
>> host.set_ylim(min(FTm), max(FTm))
>>
>>
>>
>> host.set_xlabel("Distance ($\AA$)")
>> host.set_ylabel("Atomic Number")
>> par1.set_ylabel("Atom Mass")
>> par2.set_ylabel("Atom Electron Density")
>>
>> p1, = host.plot(data[:,0], data[:,1])#, label="Atomic Number")
>> p2, = par1.plot(data[:,0], data[:,2])#, label="Atom Mass")
>> p3, = par2.plot(data[:,0], data[:,3])#, label="Atom Electron Density")
>>
>>
>> par1.set_ylim(min(FTe), max(FTe))
>> par2.set_ylim(min(FTc),max(FTc))
>>
>>
>> #host.legend()
>>
>> host.axis["left"].label.set_color(p1.get_color())
>> par1.axis["right"].label.set_color(p2.get_color())
>> par2.axis["right"].label.set_color(p3.get_color())
>>
>> host.title.set_text('Molecule: {0} - Molecular Transforms'.format(name))
>> plt.draw()
>> plt.show()
>>
>> #name_plt = name+'-fig1.png'
>> name_plt = name
>>
>> fig.savefig(name_plt,bbox_inches='tight')
>>
>>
>> Also attached with a copy of the input file.  (I don't know if it will be
>> stripped out or not)
>>
>>
>> --
>> Stephen P. Molnar, Ph.D.                Life is a fuzzy set
>> www.molecular-modeling.net              Stochastic and multivariate
>> (614)312-7528 (c)
>> Skype: smolnar1
>>
>>
>> _______________________________________________
>> Users mailing list
>> Users at lists.geany.org
>> https://lists.geany.org/cgi-bin/mailman/listinfo/users
>>