[Geany-Users] Run Error
Stephen P. Molnar
s.molnar at xxxxx
Wed Nov 22 15:53:52 UTC 2017
On 11/22/2017 10:13 AM, Matthew Brush wrote:
> On 2017-11-22 06:29 AM, Stephen P. Molnar wrote:
>> I am running Geny v-1.31 from Debian Stretch on my Linux platform.
>>
>> FOr unknown reasons I have started getting error messages from a
>> Python 3..5 script I wrote to plot multiple curves frlom data
>> generated by a FORTRAN09 program.
>>
>> Enter Molecule ID: A
>> Traceback (most recent call last):
>> File "MolT_5IMT_w_3_2_plot.py", line 83, in <module>
>> fig.savefig(name_plt,bbox_inches='tight')
>> File
>> "/usr/local/lib/python3.5/dist-packages/matplotlib/figure.py", line
>> 1814, in savefig
>> self.canvas.print_figure(fname, **kwargs)
>> File
>> "/usr/local/lib/python3.5/dist-packages/matplotlib/backend_bases.py",
>> line 2180, in print_figure
>> self.figure.dpi = dpi
>> File
>> "/usr/local/lib/python3.5/dist-packages/matplotlib/figure.py", line
>> 436, in _set_dpi
>> self.set_size_inches(w, h, forward=forward)
>> File
>> "/usr/local/lib/python3.5/dist-packages/matplotlib/figure.py", line
>> 745, in set_size_inches
>> manager.resize(int(canvasw), int(canvash))
>> File
>> "/usr/local/lib/python3.5/dist-packages/matplotlib/backends/backend_tkagg.py",
>> line 540, in resize
>> self.canvas._tkcanvas.master.geometry("%dx%d" % (width, height))
>> File "/usr/lib/python3.5/tkinter/__init__.py", line 1698, in
>> wm_geometry
>> return self.tk.call('wm', 'geometry', self._w, newGeometry)
>> _tkinter.TclError: can't invoke "wm" command: application has been
>> destroyed
>>
>>
>> ------------------
>> (program exited with code: 1)
>> Press return to continue
>>
>> Unfortunately, I am an Organic Chemist and not really a Python
>> programmer and wpuld really appreciate some help in solving this
>> problem.
>>
>
> It's not a Geany related problem, it's something with your code, but
> it's hard to say what since you didn't attach/pastebin the code. I
> expect based on the error message that you are calling the 'wm'
> command after (or before) the tk main window has been created.
>
> Regards,
> Matthew Brush
> _______________________________________________
> Users mailing list
> Users at lists.geany.org
> https://lists.geany.org/cgi-bin/mailman/listinfo/users
Here's the code:
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
Multiple_Plots_3.py
Copyright (c) 2017 Stephen P. Molnar, Ph.D. All rights reserved.
"""
import numpy as np
from mpl_toolkits.axes_grid1 import host_subplot
import mpl_toolkits.axisartist as AA
import matplotlib.pyplot as plt
data = []
name = input("Enter Molecule ID: ")
name_in = name+'_P'
data = np.genfromtxt(name_in)
s = data[:,0]
FTm = data[:,1] #atomic number
FTe = data[:,2] #atomic mass
FTc = data[:,3] #atom electron density
fig = plt.figure(figsize=(7.6,4))
host = host_subplot(111, axes_class=AA.Axes)
plt.subplots_adjust(right=0.75)
par1 = host.twinx()
par2 = host.twinx()
offset = 60
new_fixed_axis = par2.get_grid_helper().new_fixed_axis
par2.axis["right"] = new_fixed_axis(loc="right",
axes=par2,offset=(offset, 0))
par2.axis["right"].toggle(all=True)
host.set_xlim(0, 30)
host.set_ylim(min(FTm), max(FTm))
host.set_xlabel("Distance ($\AA$)")
host.set_ylabel("Atomic Number")
par1.set_ylabel("Atom Mass")
par2.set_ylabel("Atom Electron Density")
p1, = host.plot(data[:,0], data[:,1])#, label="Atomic Number")
p2, = par1.plot(data[:,0], data[:,2])#, label="Atom Mass")
p3, = par2.plot(data[:,0], data[:,3])#, label="Atom Electron Density")
par1.set_ylim(min(FTe), max(FTe))
par2.set_ylim(min(FTc),max(FTc))
#host.legend()
host.axis["left"].label.set_color(p1.get_color())
par1.axis["right"].label.set_color(p2.get_color())
par2.axis["right"].label.set_color(p3.get_color())
host.title.set_text('Molecule: {0} - Molecular Transforms'.format(name))
plt.draw()
plt.show()
#name_plt = name+'-fig1.png'
name_plt = name
fig.savefig(name_plt,bbox_inches='tight')
Also attached with a copy of the input file. (I don't know if it will
be stripped out or not)
--
Stephen P. Molnar, Ph.D. Life is a fuzzy set
www.molecular-modeling.net Stochastic and multivariate
(614)312-7528 (c)
Skype: smolnar1
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