<p>Ok. It is Gtk's problem. But for people downloading the version for windows with gtk included we should provide an workaround either in the help or inside the .md. Just marking the issue with a tag "workaround" is not very helpful.<br>
Changing the theme in Windows does not affect the gtk theme. So there is no analog with «...wanting a web browser's...»  (unless the reference is for browsers that do not use window's theme but gtk's ) as codebrainz stated. Users do not know where installation program installed the gtk runtime that will be used with Geany. So they cannot easily change the theme for the very specific gtk run-time.</p>

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