<p>PEP-484 is still provisional, its API may change.  The parser comes from the <a href="https://github.com/universal-ctags/ctags">Universal Ctags</a> project.  The latest version of that appears to support PEP 526 annotations, but not PEP 484.</p>
<p>Updating parsers in Geany is "in progress" but is a big job and somewhat slow, but when complete those PEP526 annotations should not break the parser.</p>
<p>You should open an issue with the Universal Ctags project to discuss adding the full PEP 484, perhaps when it is finalised.</p>

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