<p>Are the files that open differently detected as the same mime type?</p>
<p>XML is used for lots of things, and the mime type detector can tell them apart from the contents, there is not one "XML" type, see <a href="https://en.wikipedia.org/wiki/XML_and_MIME">here</a>.  And each mime type can have a different opening command configured.</p>
<p>If they are different mime types they may have different geany commands configured?</p>

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