<p>Ok, since you had two systems one working and one not the first idea was to find what was different, simply having a different desktop would normally be considered to have no effect.</p>
<p>But in the absence of any other differences I guess its Gnome's fault, maybe its causing GTK to do something in the background, like enumerate filesystem contents in case you open the file chooser or something similar.</p>
<p>Did you check for anything else using CPU in the Gnome case?</p>

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