[Github-comments] [geany/geany] geany always clear excute permission (Issue #3104)

[elextr]

But new versions of Geany do not modify the user config, so you either have a config so old that the GIO option did not exist and the atomic option was default (I mean _really_ old, so unlikely) or you accidentally changed the setting clicking around in `Edit->Preferences->Various` at some point and it was preserved in your user config.

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