I cleared the folders and ran the ./install file which created fresh copies of the files in ~/.config/geany/filedefs and colorschemes.
Here is the output from the file:
23:43:15: Gtk WARNING : Unable to locate theme engine in module_path: "pixmap",
23:43:15: Gtk WARNING : Unable to locate theme engine in module_path: "pixmap",
23:43:15: Gtk WARNING : Unable to locate theme engine in module_path: "pixmap",
23:43:15: Gtk WARNING : Unable to locate theme engine in module_path: "pixmap",
23:43:15: Geany INFO : Geany 0.21, en_US.UTF-8
23:43:15: Geany INFO : GTK 2.24.6, GLib 2.30.0
23:43:15: Geany INFO : System data dir: /usr/local/share/geany
23:43:15: Geany INFO : User config dir: /home/noah/.config/geany
23:43:16: Geany INFO : Added filetype Cython (52).
23:43:16: Geany INFO : Added filetype Scala (53).
23:43:16: Geany INFO : Added filetype Genie (54).
23:43:16: Geany INFO : /var/www/tony/modules/kacela/vendor/Gacela/library/Gacela/Mapper/Mapper.php : PHP (UTF-8)
23:43:16: Geany INFO : Loaded /usr/local/share/geany/php.tags (PHP), 2338 tag(s).
23:43:16: LIBDBUSMENU-GTK CRITICAL : watch_submenu: assertion `GTK_IS_MENU_SHELL(menu)' failed
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Noah Goodrich
Cell: 801.369.9160