because the Geany keybindings are searched before the plugin ones

If you mean it searches default Geany keybindings before customized plugin ones, then yeah, that's definitively a bug then. It should do:

1. Customized core keybindings
2. Customized plugin keybindings
3. Default core keybindings
4. Default plugin keybindings

One could argue whether core or plugin keybindings should be used first, but nothing the user has customized (ie. the stuff in home dir) should ever be overridden by system defaults, IMO.

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