One more guess: did you pass /tmp/geanytest with --prefix to ./configure? If not, Geany would load the geany.glade file from your old installation and this would explain at least the missing filter entry @techee mentioned.

That was it. I did a ./configure && make... but then I forced with a ./configure --prefix to do some tests before installing. The binaries were already pointing to /usr/local. Its all my fault

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