-F is only added if use regular expressions is not checked (or at least it should, I didn't test right now), so it should be preserved (or adapted to work everywhere).

More generally, I agree with @elextr: we should have something configurable, but not drop current features or make them not work by default. The current code is supposed to handle grep, not every tool that try and replace it, in a possibly incompatible way. I myself currently use a wrapper script to use git grep out of the box on Git repos -- it's not too pretty but it works fine.

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