I've just tried this also on Android xml drawable resources and can't reproduce it here.
You might try to reset the file association by control-clicking the file in Finder, selecting Get Info and making sure Geany is selected in "Open with". Also you can press the "change all" button. I don't know if macOS tries to be "intelligent" and can distinguish various types of XML files - maybe for some of the XMLs it thinks it's another type of XML and launches Geany in some "special" way.
But again, it's more like a macOS thing than a Geany thing - Geany doesn't care what file you open and it shouldn't affect how it's launched.
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