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Sorry, I have no experience with Void Linux ^^; You might get more exposure by posting this as a separate issue. You could still link it to this PR and the accompanying issue.
Just to clarify, Void sets $HOME to /tmp during the build, which results in gtk evaluating /tmp to ~.
https://github.com/void-linux/void-packages/blob/1c5c95649891f0ffd58e3a368f6b391db219de24/common/xbps-src/shutils/chroot.sh#L99
Setting home to somewhere else during the check (e.g. $PWD) does work.
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