I don't know how IDLE made it work, but you have one file in /home/pi/ (ifsample.py) and the other in /home/pi/Desktop/ (test.py); that's unlikely to give good results. It probably would work if you started test.py from directory /home/pi, which might be what IDLE did, but Geany defaults to running in the file's own directory, which is /home/pi/Desktop here. Python has no way to know it should look into /home/pi, as it's not a default search path and you didn't explicitly tell it to.

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