In src/keyfile.c:

> @@ -1287,13 +1285,6 @@ void configuration_apply_settings(void)
>  	}
>  	g_free(scribble_text);
>  
> -	/* set the position of the hpaned and vpaned */
> -	if (prefs.save_winpos)
> -	{
> -		gtk_paned_set_position(GTK_PANED(ui_lookup_widget(main_widgets.window, "hpaned1")), hpan_position);
> -		gtk_paned_set_position(GTK_PANED(ui_lookup_widget(main_widgets.window, "vpaned1")), vpan_position);
> -	}
> -

I believe the only reason why it was here was that hpan_position and vpan_position were read in this file and accessible only here.

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