You could probably hack something with the -c option to Geany.

Something like this not well tested shell script comes to mind:

#!/bin/sh
set -e
temp_dir=$(mktemp -d -t geany-config-XXXXXXXX) || exit 1
trap "rm -rf ${temp_dir}" EXIT
cp -r "${HOME}"/.config/geany/* "${temp_dir}"
geany -i -c "${temp_dir}"

Save it as an executable script somewhere and then run that when you want to hack on the super secret stuff. You could also just write a simple wrapper script that opens Geany normally and after it closes, use sed or whatever to delete the recent_files or whichever entries from geany.conf.

Just a couple workarounds.

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