@codebrainz commented on this pull request.

In src/ui_utils.c:

> @@ -2097,7 +2097,9 @@ static void on_config_file_clicked(GtkWidget *widget, gpointer user_data)
 		if (g_file_test(global_file, G_FILE_TEST_EXISTS))
 			g_file_get_contents(global_file, &global_content, NULL, NULL);
 
-		document_new_file(utf8_filename, ft, global_content);
+		// open or create the document and mark it as changed if it didn't already exist
+		GeanyDocument *doc = document_new_file(utf8_filename, ft, global_content);
+		document_set_text_changed(doc, ! g_file_test(file_name, G_FILE_TEST_EXISTS));

Maybe I should just take it out of this PR, since it's kind of tangential. Another PR could deal with this and also not filling in the files with all the contents of system files.

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