You can use the --socket-file option to open a file in a specific instance of Geany. For example, if you execute these two commands:

geany --socket-file=/tmp/geany1 /tmp/foo
geany --socket-file=/tmp/geany1 /tmp/bar

you get one instance of Geany with two open documents, /tmp/foo and /tmp/bar.

Here’s a script I use (on Linux) to have one instance of Geany per workspace: https://gist.github.com/vfaronov/6843c6bc817521bfab7e58fff139c525

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