Maybe it's one of the dependencies of GTK+ used for font handling/rendering that differs between the Windows release and your Linux, such as FreeType or Pango. If I remember correctly in Windows you can right click on a .dll and click Properties to see version information in one of the tabs. Maybe you could compare that to the versions of FT/Pango libraries on your Linux. If that's the case, the workaround may be as simple as updating the relevant .dll on the Windows machine by dropping in a new one.

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