@codebrainz commented on this pull request.

In src/ui_utils.c:

> @@ -2097,7 +2097,9 @@ static void on_config_file_clicked(GtkWidget *widget, gpointer user_data)
 		if (g_file_test(global_file, G_FILE_TEST_EXISTS))
 			g_file_get_contents(global_file, &global_content, NULL, NULL);
 
-		document_new_file(utf8_filename, ft, global_content);
+		// open or create the document and mark it as changed if it didn't already exist
+		GeanyDocument *doc = document_new_file(utf8_filename, ft, global_content);
+		document_set_text_changed(doc, ! g_file_test(file_name, G_FILE_TEST_EXISTS));

It's not opening an existing file, it's creating a new unsaved file.

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