There is no "vanilla" ctags, the Ubuntu packages are called exuberant-ctags and universal-ctags and both install the ctags program, but exuberant ctags is actually a debian package, whereas the universal ctags package is maintained by the Ubuntu developers.

As I said Exuberant ctags is unmaintained, the last commit to its SVN appears to have been in 2014, so basically its not what you should be using. So I would strongly recommend you switch.

That doesn't mean the problem will go away of course, but you should try it first.

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