I forgot you can see what locale Geany thinks its in by looking at Help->Debug Messages which should say something like:

Geany INFO		: Geany 1.39 (git >= b7558417), en_AU.UTF-8

Note LC_ALL environment variable is a convenience to override all the other variables with its value, it does not need to be set if all the other variables are set. Geany calls setlocale(LC_ALL, "") as required to set the various locale categories according to precedence order defined in 8.2 here

Python site.py changed in 3.10 to explicitly use your LC_CTYPE value to read .pth files, so maybe it uses LC_ALL in 3.6 and so assumes ASCII when its not set.

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