I wouldn't make the setting variable comments too similar to the actual comments - they then become hard to distinguish, see:

# set to false if a comment character/string should start at column 0 of a line, true uses any
# indentation of the line, e.g. setting to true causes the following on pressing CTRL+d
	#command_example();
# setting to false would generate this
#	command_example();
# This setting works only for single line comments
#comment_use_indent=true

where only the last line is the actual settings. Actually I think we should distinguish these more. What about adding an extra # to the existing comments? Things become more clear I think:

## set to false if a comment character/string should start at column 0 of a line, true uses any
## indentation of the line, e.g. setting to true causes the following on pressing CTRL+d
#	#command_example();
## setting to false would generate this
##	command_example();
## This setting works only for single line comments
#comment_use_indent=true

Maybe I should put # in front of the existing # so the command_example() is consistent with the rest.

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