I download source of SciTE and run
make GTK3=1
under scintilla/gtk/ and scite/gtk (on Fedora 29).
SciTE runs almost fine from the command line... But the problem is still there, and it shows:
Gdk-Message: 21:36:23.603: Window 0xee4c80 is a temporary window without parent, application will not be able to position it on screen.
each time I type " or ^ dead key.
A curious thing: I can type ^e in a search/find dialog without any problem (I get ê).

Where to dig now?

I've got the same problem in the official binary of fedora 29 distro. Solved by running geany with the following command:
GDK_BACKEND=x11 geany

It seems to be a problem with wayland gdk.


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