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The original looks safe, is_header is set at https://github.com/geany/geany-plugins/blob/6e697f2582b03db6749b91da2f247c6e60b016e2/projectorganizer/src/prjorg-utils.c#L327 except when known_type is set FALSE. Then all uses of is_header are guarded by known_type being true so its safe.
Probably olde cppcheck simply objected to all uninitialised variables, but new cppcheck is smarter and looks at actual usage.
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