As far as I can find, Geany will only use the line endings specified in "Preferences / Files / Default end of line characters" when it creates new files. Existing files will keep their line endings, unless you check the "Ensure consistent line endings" box, in which case I suppose Geany will find out what type of line ending is in the majority, and use that throughout the file.
What I would like is an option to always, unconditionally, force the default line ending to be applied when saving any file, whether newly created or previously existing.

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