I wonder how I could modify, compile and run it in parallel besides the Debian repos version, any tips?

Clone the source from Git and run autogen.sh --prefix=$HOME/wherever/you/like, then make install, then run it like $HOME/wherever/you/like/bin/geany.

Besides, how do you guys handle the GUI part of Geany? It seems they are coded directly and without any visible aid like Anjuta or the like.

It's a mix. Most of the GUI is done using Glade, but there is also some (too much) which is just hard-coded.


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