As I have said twice above, Geany does not open the file and does not control the mode, Geany calls Glib or GIO library calls which claim to return the file contents. Perhaps the version of those libraries is different to the one used in 1.28 and they changed something. But unusual for both to change in the same way, does Geany 1.28 with line endings turned on show the CRLF properly and what version of Glib is it using?

Choosing the read library based on the write setting may seem strange, but IIRC the read library is GIO when the write library is GIO because GIO does some caching that the other library doesn't and so there can be subtle errors in metadata if they are mixed. I know there was a change to keep the two code paths totally separate.

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