Why was the g_ version used in the first place since there is no matching g_fwrite()

It's to handle filenames uniformly I expect, for example on Windows to take a UTF-8 string for filename and mode and convert them to wide-char/UTF-8 like Windows uses normally. The definition is here

I don't there's an issue as the same C lib will be used in all supported configurations (mscvrt or glibc). It might be a problem if Geany g_fopen-ed a FILE and passed it to Scintilla, which uses a different C runtime (part of libstdc++ IIUC).

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