Scroll wheel actions in the edit window are handled by the Scintilla widget. It appears that Wayland reports all scroll wheel movements as smooth scrolling, not normal scrolling. Scintilla has code to differentiate that, but has to be built on a system with GDK that advertises Wayland support and has to detect Wayland at runtime as well before that code is used. But if it is not then IIUC the scroll wheel inputs will be lost.

So it depends on where you got your Geany from and where it was built.

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