As for Geany code, I'd tried it closer. The following corrections introduce %f, %d and other Run's wildcards in the context string:

build.h

gchar *build_replace_placeholder(const GeanyDocument *doc, const gchar *src);

build.c

GEANY_API_SYMBOL
gchar *build_replace_placeholder(const GeanyDocument *doc, const gchar *src)

callbacks.c

gchar *command_line = g_strdup(command);
command_line = build_replace_placeholder(doc, command_line); //apl
utils_str_replace_all(&command_line, "%s", word);

But it does not resolve the whole issue.

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