Oh and if those plugins are missing then it's the fault of your build system fork geany-plugins.

The build system doesn't enable any plugin if they have a missing dependency, but some plugins don't have any extra deps. It rather sounds like you didn't properly build GP against the Geany you just built, and it tried to install plugin files into the system's Geany's libdir (as it has to put them there for Geany to find them, even if it's outside PREFIX). best suggestion is to override PKG_CONFIG_PATH to point to the custom built Geany's lib/pkgconfig. Alternatively, use --with-geany-libdir=PATH configure option.

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